cv
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General Information
| Full Name | Katherine Caley |
| Languages | English (native speaker), Python (fluent), Spanish (beginner) |
Education
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2021 Bachelor of Science (Honours)
The Australian National University - Thesis title: Quantifying the disequilibrium of DNA sequence evolution
- Supervisor: Prof. Gavin Huttley
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2017-2020 Bachelor of Science
The Australian National University - Major: Computer Science and Cell and Molecular Biology
Experience
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2023-2025 Scientific Programmer
Research School of Biology, The Australian National University - Maintainer of cogent3, the COmparative GENomics Toolkit.
- Developer of Diverse-Seq, a tool for the selection and clustering of biological sequences.
- Contributor to gbintk, a toolkit for the analysis of metagenomic data.
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2022 Research Assistant
Biological Data Science Institute, Australian National University - Develop scripts for the colour normalisation of histology images.
- Prototype survival analysis pipelines for cancer data.
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2020/2021 Summer Research Intership
Research School of Biology, The Australian National University
Honors and Awards
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2022 - Chancellor's Letter of Commendation for 2021: Outstanding Academic Performance (Annual GPA of 7.0)
- Best Student Talk at Phylomania, an International Conference of Theoretical Phylogenetics
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2021 - Director's Prize in Honours: for achieving the highest mark in Biology Honours
Presentations
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2024 Are genome k-mer compositions stable through time?
SDU-ANU Joint Computational Biology Mini-Symposium -
2023 Cogent3: Making Sense Out of Sequence
Shandong University, QingDao -
2022 Is the Human genome in mutation equilibrium?
Phylomania, International Conference of Theoretical Phylogenetics -
2021 Is the Human genome in mutation equilibrium?
The Australian Bioinformatics and Computational Biology Society Conference
Teaching Experience
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2023 Theoretical and Applied Genetics
Joint College of Science, The Australian National University and Shandong University -
2023 Bioinformatics and its Applications
Research School of Biology, Australian National University -
2022 Bioinformatics and its Applications
Research School of Biology, Australian National University